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Showing posts with label Data Sharing. Show all posts
Showing posts with label Data Sharing. Show all posts

Monday, August 27, 2012

ELIXIR - 'A sustainable infrastructure for managing biological information in Europe' - One year on

It's been nearly a year since we last wrote about Elixir, the European research infrastructure project looking to support life-science information. Our friends at the European Bioinformatics Institute made us aware at the time that a pan-European project was under way to build and operate a sustainable infrastructure for managing and safeguarding biological information including genetic, protein and complex network analysis outputs.

So what's been happening in the intervening period?

Another seven countries have signed the Memorandum of Understanding in that time, broadening the remit and support-base for the initiative. The wider this base the better in light of the organisation's assertion that "the collection, curation, storage, archiving, integration and deployment of biomolecular data is an immense challenge that cannot be handled by a single organisation or by one country alone, but requires international coordination."

The European Commission's Community Research and Development Information Service (CORDIS) page on the project indicates that the first phase of funding is due to come to an end in December 2012 having run for five years. The project's aims over that period were all directed at gaining the widest possible support for the initiative by means of Memoranda of Understanding and included defining:
  • The scope of the infrastructure, its role and benefits
  • An appropriate governance and legal structure
  • A long term funding structure to provide a sustainable infrastructure
  • The requirements for the European Data Centre in the next 5-10 years
  • The critical interdisciplinary links that need to be forged between the biological and related scientific disciplines, including medicine, agriculture and the environment
  • The needs of related European industries
  • A training strategy to ensure that Europe effectively exploits all the available information
In carrying out this work Elixir assert that they were committed to involving all relevant stakeholders including users, data providers, tools providers to ensure that the infrastructure designed would be fit for purpose and exploring interoperability and supporting standards facilitating the between integration between core and specialised data resources.

Back in November 2011, we were anticipating the the Interim Board's announcement of the first phase of construction, however, we should point out that this period in Elixir's development is still the Preparatory Phase which title may make sense of the difficulty we've had finding concrete outputs from the project - the website for the Preparatory Phase is a little low-tech and also a little out of date - for more up-to-the-minute news see the Press Releases page on the main Elixir site from which you can see that much of the recent news involves the 'on-boarding' of various different European states but also covers the inception of their newsletter and, of most interest to us, the start of a new initiative co-ordinted by Elixir: BioMedBridges.

In their own words: "BioMedBridges is a joint effort of ten biomedical sciences research infrastructures on the ESFRI roadmap. Together, the project partners will develop the shared e-infrastructure—the technical bridges—to allow interoperability between data and services in the biological, medical, translational and clinical domains and thus strengthen biomedical resources in Europe. Launched in January 2012, the four-year initiative has been financed with €10.6 million by the European Commission’s Seventh Framework Programme."




Monday, May 14, 2012

Clinical Practice Research Datalink courts potential users

We received on Friday our invitation to the Clinical Practice Research Datalink (CPRD) Users Meeting that will be held at the MHRA offices in London on 24th May 2012, consisting of a series of short presentations by representatives of CPRD and external partner organisations to give "further insight, and an opportunity for input, into the current and future aims of CPRD."

The background we have covered severally before (see here and here): "CPRD is the new English NHS observational data and interventional research service, jointly funded by the NHS National Institute for Health Research (NIHR) and the Medicines and Healthcare products Regulatory Agency (MHRA). It combines the piloting work of the Research Capabilities Programme (RCP) and the existing General Practice Research Database (GPRD)."

CPRD services are designed to maximise the way anonymised NHS clinical data can be linked to enable many types of observational research and deliver research outputs that are beneficial to improving and safeguarding public health. CPRD will act to provide services to a wide range of researchers and the aim of the Users Meeting will be to ensure that its plans meet the needs of the broad cross section of researchers in academia, the NHS and commercial companies both in the UK and globally.

The specific topics that will be covered on the day include:
  • Pragmatic and Phase III - IV clinical trials
  • Multidimensional data quality
  • Hospital prescribing data
  • Models for linkage
  • Disease and patient group data marts
The day will provide "several opportunities for potential users to raise and discuss their priorities and requirements" to ensure CPRD meets researchers' needs.
It is possible that we won't be able to attend ourself so if any of our readers are planning on going along, let us know and we'll get in touch to see if you want to post some feedback on these pages!

Monday, May 7, 2012

Managing Research Data - the Joint Information Systems Committee Programme

In covering the BRISSkit vision for a cloud-based open-source "research application as a service" at the end of last year, we mentioned the Joint Information Systems Committee's (JISC)  Managing Research Data workstream about which we've been hearing a lot more recently and thought we should pass on the basics and a link for your own browsing:

JISC are a non departmental public body who support higher education and research in the UK by providing advice on the use of ICT - their Managing Research Data workstream supports both good data management and the sharing of data "for the benefit of UK Higher Education and Research". Their work in this area focuses on infrastructure, practice and skills:

  • piloting essential research data management infrastructures within institutions and for distributed research groups
  • improving practice in research data management planning
  • developing tools to help institutions plan their research data management practice
  • encouraging the publication of research data and demonstrating the benefits of improved methods for citing, linking and integrating research data
  • and, stimulating the acquisition of appropriate skills, among academics and research support staff in Universities
Follow this link to their page which contains further information about their internationally recognised Digital Curation Centre and more information on the five strands of the programme which include projects, planning, tools and training.

Wednesday, April 4, 2012

Clinical Practice Research Datalink is finally here - or is it?

The new Clinical Practice Research Datalink about which we have blogged much in the past has finally arrived (http://www.cprd.com/intro.asp) amid a certain amount of fanfare - see this from Pharma Times, this from PMLive and this from GP magazine.

 You may notice that the GPRD pages now redirect to this site and to a certain extent, this is largely a rebranding exercise at the moment. Behind the scenes a team at the DoH are trying to ensure that major data sources are willing and able to engage with this initiative but the speed at which they come online remains to be seen. We'll fill you in further on plans for a researchers data-catalogue interface as this project advances - and if CPRD are not offering that just yet, perhaps the MRC are - we'll get you up to date with the MRC's Data Support Service before the week is out.



Wednesday, March 21, 2012

Clinical Practice Research Datalink edges nearer

We were interested to find today this URL for the new Clinical Practice Research Datalink about which we have blogged much in the past. Click on it and you will see the screen below (click the picture to zoom in) and thus be able to sign up for news of it's development. April seems pretty close now though we were aware that the Department of Health had set out some pretty aggressive deadlines - we hope to be surprised (pleasantly) come April Fools [note also that the MHRA appear to be hiring now for data specialists...]

Tuesday, February 21, 2012

Patients' views on participating in medical research - Part 2: Engagement and Participation

Our last post here began our summary of recent work on patients' attitudes to participating in medical research - part of our primer on the current state of play in clinical research in the UK selecting choice elements from recent reports; check out the footnotes for interesting sources to follow up. We include in this a look at the influence of media coverage of issues pertaining to data security on patients' attitudes and behaviour.

As always, let us know what you think - if there are more recent / complete / credible studies out there which draw different conclusions, let us know!

Engagement and participation

The UK has a long history of public support for health research, as evidenced by the large number of participants in clinical trials and population studies (For example, the UK Collaborative Trial of Ovarian Cancer Screening and UK Biobank have recruited their targets of 200,000 and 500,000 individuals (respectively) with minimal objection to the use of their healthcare data) and the generous contributions to medical research charities such as Cancer Research UK and the British Heart Foundation.[1]

Public engagement initiatives in relation to specific issues, such as the use of patient data, generally show that research is warmly supported. The attitudes of over 1,000 adults towards participating in health research were examined in the Wellcome Trust Monitor survey. Seventy-one per cent of participants indicated that they would be willing to give blood or tissue samples for research and 62% were willing to test a new treatment for a disease from which they were suffering.[2]

Evidence from two national research studies demonstrates that a small number of patients complain about receiving direct invitations to participate in research. The UK Collaborative Trial of Ovarian Screening is one of the largest ever randomised controlled trials, covering 13 NHS Trusts in England, Wales and Northern Ireland, with successful recruitment of more than 200,000 women. Of the 1.2 million women invited to participate in the study only 32 complained about being contacted. UK Biobank reported from its integrated pilot phase that approximately 1 person from 1,000 invitations indicated that they did not want to participate because of concerns that their contact details had been provided to UK Biobank by the NHS.[3]

There are a large number of organisations working to improve patient and public engagement with health research, including (but not limited to) UK Clinical Research Collaboration (UKCRC), INVOLVE, regulators themselves, the medical Royal Colleges, research charities and disease specific patient groups working to help the public understand the role and importance of research as an integral part of the care system. 

Media view – data protection

The influential role of mass media has important implications for the formation of public opinion and consequently public behaviour and the actions of policy makers. The most significant impact on attitudes towards the storage, transmission and use of personal data in healthcare is made by coverage of breaches of regulations and guidelines.

Though many of the stories do not relate to data used in research per se, their impact contributes to patients’ concerns about any use of personal medical data.

Storage and transmission of data are key to research, many large datasets (for example the national disease registries) inducting data from a variety of sources and releasing data for research to geographically dispersed users. A key aspect of the conduct of research is the ease with which those researchers can receive the data. The choice of transmission method is not driven solely by actual risk analysis: while an encrypted DVD has a high level of innate security, public perception of sensitive information being moved around on DVDs, memory sticks and laptops is an important consideration. In fact it was a major issue identified in the UK Ministry of Justice's report on Data Sharing, 2008.[4]

A recent article from eWeekeurope.co.uk backs up perception with data under the inflammatory headline “A Freedom of Information request by… Software AG has revealed that most public sector bodies have no idea about secure data transfer.”[5] The article cites recent examples of the loss of sensitive information by public bodies: “A couple of years ago, Her Majesty’s Revenue and Customs (HMRC) lost a number of CDs containing private information on thousands of people. But there have been many more recent examples. Last July the UK Ministry of Defence admitted it had lost an entire server from a secure building – as well as 1.7 million individuals’ personal data. In November the UK Rural Payments Agency (RPA) lost backup tapes containing the payment and banking details of 100,000 farmers in the United Kingdom. And only last month an NHS worker in the secure mental health unit of a Scottish hospital was suspended, after he lost a USB stick containing patients’ medical records. The USB stick apprently contained unencrypted sensitive information – including the criminal histories of some violent patients at the Tryst Park unit at Bellsdyke psychiatric hospital. The stick was later found by a 12-year-old boy in the car park of an Asda supermarket.”

The NHS was recently (April 2010) revealed by the Information Commissioner’s Office (ICO) to be responsible for the highest number of serious data breaches of any UK organisation since the end of 2007. David Smith, deputy commissioner at the ICO told the Infosec security conference the NHS had highlighted 287 breaches to it in the period, accounting for more than 30% of the total number reported.[6] Most of the breaches were the result of stolen data or hardware, followed by 82 cases of lost data or hardware. Richard Vautrey, the deputy chair of the British Medical Association's GPs committee thinks the number of breaches reflect the size and complexity of the NHS (the UK's largest employer with 1.7m staff) as well as its culture of openness.[7] Whilst comments in the BBC’s coverage mention in mitigation that the public sector’s culture of reporting all breaches contrasted with the private sector’s behaviour, these do little to lessen the impact of the headline: “NHS worst for data breaches.”


[1] The Academy of Medical Sciences: A new pathway for the regulation and governance of health research
[2] Ibid.
[3] Ibid.
[4] Ministry of Justice: Data Sharing Review, 2008 [Richard Thomas, Information Commissioner; Dr Mark Walport]
[7] Ibid.

Thursday, February 16, 2012

Patients' views on participating in medical research - Part 1: Attitudes

While we are still working on our 'Funders' Policies on data sharing' article we decided to post here a summary of recent work on patients' attitudes to participating in medical research - again, a primer on the current state of play in clinical research in the UK selecting choice elements from recent reports; check out the footnotes for interesting sources to follow up. Part 2 will cover Engagement and Participation and will be followed by a piece on medics' attitudes to research. As always, let us know what you think - if there are more recent / complete / credible studies out there which draw different conclusions, let us know!

We also came across a tweet today from Simon Denegri linking via his blog to an NIHR site containing video testimonials of the experiences of patients, nurses and doctors taking part in or working on clinical trials which is worth a look too. Apologies for the bizarre formatting of the bullet-points below!


Attitudes

The following bullet points are extracted from the text of the report “The Use of Personal Health Information in Medical Research General Public Consultation” which presents the the findings of a programme of research carried out among the general public by Ipsos MORI on behalf of the Medical Research Council (MRC) published in July 2007 with the aim of “Identifying public concerns and misconceptions surrounding the secondary use of personal health information for medical research.”

In summary they found that there was low public awareness of medical research, that the public were in general supportive of research when informed about it and when they felt in control of their data – but continue to have reservations about privacy:

·         “The advantages of medical research are seen by the public to far outweigh the disadvantages. Seven in ten feel the merits of research outweigh the disadvantages, compared to only 6% who say the opposite.”

·         The qualitative phase of this consultation showed that there was little public awareness and understanding of medical research (and thus the use of secondary health information for medical research purposes), who undertakes it and to what ends.

·         “The workshops indicate that, if the public is informed about what medical research entails, they are generally positive towards it. Communications are key to building public trust… Key to effective communication on the subject is the need to keep terminology simple.”

·         The quantitative phase of the research showed that “Just over a third (34%) cannot think of any associations with the phrase personal health information, which indicates fairly low awareness for the MRC to address.”

·         “Perceptions of who, or which organisations people feel would hold personal health information focus mainly around the health service [GPs, hospital doctors and the NHS]. Medical researchers (working in any capacity) are mentioned by less than 1% of the general public.”

·         “If the public feels in control of their information and its potential uses, then they are likely to be more inclined to allow their personal health information to be used for medical research purposes…The qualitative research shows that the main public concerns are over organisations sharing this information, particularly for commercial gain…. Medical researchers working in the public sector i.e. for Government and universities (both trusted by 11%) are more trusted than their counterparts working for private companies (4%). The private sector features prominently among the least trusted organisations where personal health information is concerned.”

·         “While most see the benefit of personal health information being used for medical research purposes, the very same people can hold reservations over the implications for privacy…. The most common reason for being unlikely or certain not to allow personal health information to be used for medical research purposes is concern over privacy (28%).”

·         “The two key pillars of anonymity and consent feature highly in the debate over what information should be available, to whom, and in what circumstances. These two themes are central to building trust.”

·         “The vast majority (87%) trust GPs to have access to their personal health information, and over half trust other health professionals – such as consultants or hospital doctors (59%).”

·         The public needs “a human face to reassure them and discuss the issues around consent and confidentiality with them. Health professionals in general, and GPs in particular, are the most trusted to perform this role. For many, the GP’s surgery is the most frequent point of contact on health issues and it would seem sensible to use this as one location for dissemination of information about personal health information for medical research purposes.”[1]

The Academy of Medical Sciences presented a review of public engagement on the use of patient data, summarising several reports thus:

·         NHS Connecting for Health – Using patient information in the NHS (2009).98 This report found that the 96 participants were generally happy for their data to be used in research as long as anonymity was ensured and they were approached by someone they knew and trusted, such as their GP.

·         Royal Academy of Engineering –Young people’s views on the development and use of Electronic Patient Records (201099) Of 3,000 young people surveyed, most were not against the idea of anonymised data being used in medical research; 50% said that they would want to be asked for consent each time researchers used their anonymous record.

·         New Economics Foundation - Exploring public views on personal electronic health records (October 2010100) Surveyed 6000 people and found: that 57% of adults and 67% of young people were enthusiastic about the benefits of switching to digital patient records; and that patient consent would be essential for using identifiable data for research.

·         Wellcome Trust/University of Surrey – Public Attitudes to Research Governance (2006). Based on interviews and focus groups with 89 people; the report found participants were willing to provide personal data for biomedical research providing its use had been explained to them. Concerns remained over whether promises of anonymity and security could be fully relied on.

·         MRC/Ipsos MORI - The Use of Personal Health Information in Medical Research (2007). Interviewed a sample of 2,106 UK adults and found that 69% were ‘likely’ to allow the data to be used for health research purposes

·         Academy of Medical Sciences - Personal data for public good: using health information in medical research (2006). Consulted with a wide range of patient representatives and found research using personal data was strongly supported. Public engagement was identified as one of the most important tasks in developing future arrangements for appropriate governance for the use of health information in health research.[2]

Another 2007 report, a survey of literature covering public and professional attitudes to privacy of healthcare data commissioned by the General Medical Council and conducted by Cambridge Health Informatics, came to the following conclusions:
·         Assessment of public attitudes is dependent on how the topic is framed. People will express concerns if questioned about ‘concerns’, but will readily trade these ‘concerns’ for health  or other benefits, even altruistic ones.
·         ‘Real world’ choices can be very different (and constrained) from those offered in opinion surveys where costs and trade-offs may not appear.
·         Public attitudes are not uniform and the surveys suggest that they are often either ill-informed or unformed (or sometimes formed during an investigation or discussion).
·         Attitudes among the public vary from the completely unconcerned to a small proportion of the public that has strong views on privacy, either from a sense of a ‘right to privacy’ or because of some sensitive episode in the past that they wish to protect. The majority of the public seem to rely on trust in clinicians and the healthcare system.
·         It is clear that the public (and to some degree the professions) are unclear on the potential roles of medical records in modern healthcare.
·         The public would like a choice in the use of their records, but there is little hard evidence about what arrangement of choices the public would generally prefer – or whether there are radically different opinions on this.
·         The public appear to be becoming more comfortable with computer technology, which may reduce fears over privacy, but with increasing expectations over security and choice about access to their records.[3]
Of note these authors contend that “Generally much of healthcare policy in relation to the privacy of healthcare data has been based on historic ethical and legal considerations together with financial practicalities rather than on an evidence-base of what individuals would want or expect.  This has been, in part, been due to a perceived lack of understanding by the public at large (and many professionals too) of how medical records are actually used and shared within the healthcare system as a whole: this perception means that they have rarely been asked in any formal consultative way.”
They also contend, however, that “Establishing public concerns about the privacy of health data poses problems because, from the few surveys that have been performed, it appears that only a small proportion of the public have a strong opinion and fewer still have an understanding of the complex issues that need to be weighed up when arriving at an opinion.”[4]


[1] Ipsos MORI on behalf of the Medical Research Council: The Use of Personal Health Information in Medical Research General Public Consultation [2007]
[2] Ibid. Full citations for these reports are:
UK Clinical Research Collaboration (2010). Attitudes and awareness amongst General Practioners (GPs) and
patients about the use of patient data in research – a study by the UK Clinical Research Collaboration Board
Sub-Group on Public Awareness. UCKRC, London.
NHS Connecting for Health (2009). Using patient information in the NHS.
http://www.connectingforhealth.nhs.uk/engagement/public/consultations/hsreport.pdf
Royal Academy of Engineering (2010).Privacy and prejudice: young people’s views on the development and
use of electronic patient records.
http://www.raeng.org.uk/news/publications/list/reports/Privacy_and_Prejudice_EPR_views.pdf
New Economics Foundation (2010). Who sees what? Exploring public views on personal electronic health
records.
http://www.neweconomics.org/sites/neweconomics.org/files/Who_Sees_What.pdf
Wellcome Trust/University of Surrey (2006) Public attitudes to research governance: a qualitative study in a
deliberative context.
http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document
/wtx038443.pdf
Medical Research Council/Ipsos MORI (2007). The use of personal health information in medical research.
http://www.mrc.ac.uk/consumption/idcplg?IdcService=GET_FILE&dID=10983&dDocName=MRC003810&allowI
nterrupt=1
Academy of Medical Sciences (2006). Personal data for public good: using health information in medical
research. http://www.acmedsci.ac.uk/download.php?file=/images/publication/Personal.pdf
[3] Cambridge Health Informatics report for the General Medical Council: Public and Professional attitudes to privacy of healthcare data - A Survey of the Literature; http://www.gmc-uk.org/GMC_Privacy_Attitudes_Final_Report_with_Addendum.pdf_27007284.pdf
[4] Cambridge Health Informatics report for the General Medical Council: Public and Professional attitudes to privacy of healthcare data - A Survey of the Literature; http://www.gmc-uk.org/GMC_Privacy_Attitudes_Final_Report_with_Addendum.pdf_27007284.pdf

Monday, February 6, 2012

Data Sharing - the MRC Data Support Service and Research Data Gateway

Whilst still working on an analysis of  research funders' policies with regard to data sharing we ought to update you on the progress made by the MRC on their Data Support Service. We posted on this in May 2011 and certainly  by late last year had not heard anything further but are now delighted to see that the MRC have a few new pages indicating that phase II ( "develop[ing] a prototype online gateway for the discovery of MRC-funded population and patient studies and their variables with a Directory of MRC population cohort datasets")  has completed and that phase III is underway about which you can read more on their site from whence these bullet points:

  • [Phase III is] Developing policy guidance for population and patient studies on sharing of research data and on data management planning, with expert input and in line with policies of other funder to ensure harmonised principles
  • Launching the prototype MRC Research Data Gateway to facilitate the discovery of research data, metadata and documentation
  • Planning and developing a sustainable MRC Research Data Gatewayand Directory of Population and Patient Research Data, with data management toolkit to support data sharing
  • Engaging further cohort studies to contribute metadata to the Directory of Population and Patient Research Data
  • Growing a data managers network with a programme of value-adding activities, to enable the preceding objectives














We're particularly interested in the Research Data Gateway given our recent experience developing resource discovery portals (e.g. ONIX). The information available for each study accessible through the gateway is given below - we're not sure how to interpret 'Variable' and can't help but reflect on the lost opportunity of the now non-current DoCDat catalogue of clinical databases which provided very rich metadata on its resources including qualitative analyses - for more info on that see our blog post:

  • Study: a programme of research whereby data from and about individuals representing a population group are collected and analysed
  • Time period: a wave, sweep, time period or time point within a longitudinal study
  • Data collection event: a survey, screening, interview series or clinic, being the event through which research data were collected; there can be various data collection events within a phase
  • Variable: each data variable belongs to a particular study, phase and data collection event
  • Contact: point of contact for a study
  • Resource: an information item for a study, e.g. a questionnaire form, report, etc.


Monday, January 30, 2012

Data sharing in research - cultural and technical barriers in Life Sciences and Public Health - Part 2 - Barriers

The second section of our review of attitudes to data sharing in Life Sciences and Public Health was due to  look at policies introduced by research funders to oblige researchers to make their data accessible to the community, however, there is more to be said on this than we have currently committed to bytes or paper.

Thus we'll jump ahead here to our section on barriers to data-sharing and aim to get the section on funders' policies to you within the week...

Just a reminder that it's meant to serve as a 'primer' aggregating analyses from the last few years in this area and pointing you to the original articles and as such references other publications pretty heavily - so do check out the footnotes if you want to explore further.

Barriers – incentives and expertise

Discussions of this subject highlight the lack of active incentives (rather than obligations) to share data: “the lack of explicit career rewards, and in particular the perceived failure of the Research Assessment Exercise (RAE) explicitly to recognise and reward the creating and sharing of datasets – as distinct from the publication of papers - are major disincentives.”[1]

As mentioned above when looking at Social and Public Health Sciences the Research Intelligence Network found “found scant evidence of researchers wanting to publish datasets. Typically researchers will request data from one or more publicly-available datasets and they will undertake analysis. Often this process leads to the creation of new, derived datasets but these tend not to find their way to the public domain.”[2]

Lack of incentive is blamed for this outcome: “Unlike in some of the other areas we have looked at there are no obvious rewards that accrue to researchers who decide to make their datasets publicly-available – though few deny that sharing datasets produced with public funds is a worthwhile principle….. researchers producing small scale datasets see no reason to invest the time and effort required to make their datasets publicly available. Besides which, some want to control their data, limit the possibility of the data being misrepresented, and limit the scope for competition [our italics].” [3]

“Other disincentives include lack of time and resources; lack of experience and expertise in data management and in matters such as the provision of good metadata; legal and ethical constraints; lack of an appropriate archive service; and fear of exploitation or inappropriate use of the data….. Relatively few researchers have the expertise, resources and inclination to perform themselves all the tasks necessary to make their data not only available, but readily accessible and usable by others.”[4] Many researchers lack the skills to meet the quality standards imposed by data centres without substantial help from specialists.

Additionally, “creating longitudinal datasets is an expensive business and therefore the people responsible for them tend to feel the need to protect them. This is manifested in reported anxiety about commercial organisations using data, deriving slightly or materially different datasets and claiming intellectual property rights over these new datasets.”[5]

Across the biomedical sciences directors and PIs see their restricted data as their intellectual capital:  “As with most areas of research, there is competition between researchers to produce the best work in the best journal… Many researchers wish to retain exclusive use of the data they have created until they have extracted all the publication value they can.”[6]

From the perspective of commercial / industry groups data sharing presents many of the same challenges: Intellectual Property and Confidentiality are particularly sensitive issues. In the past big pharmaceuticals organisations have traditionally been conservative over data sharing – concerns include loss of control, cost, other units reaching different conclusions or deriving novel insights which may have commercial value.

Within this field there exists a significant heterogeneity of needs. The complexity and diversity of the biomedical research landscape breeds diversity in tools and methodologies for data capture and analysis, storage, maintenance and curation and this too may fuel confusion and dampen enthusiasm.


[1] To Share or not to Share: Publication and Quality Assurance of Research Data Outputs - - Report commissioned by the Research Information Network (RIN) in association with the Joint Information Systems Committee and the National Environment Research Council (NERC) – published June 2008. This report covered six discrete research areas, two of which were Social and Public Health Sciences and Genomics and two interdisciplinary areas, one of which was Systems Biology.
[2] Ibid.
[3] Ibid.
[4] Ibid.
[5] Ibid.
[6] Ibid.


Monday, January 23, 2012

Data sharing in research - cultural and technical barriers in Life Sciences and Public Health

As promised for the PDF-shy - the first section of our review of attitudes to data sharing in Life Sciences and Public Health - it's also well worth reading the Research Information Network's (RIN) publication Data centres: their use, value and impact which RIN neatly summarise here. This review was meant to serve as a 'primer' aggregating analyses from the last few years in this area and as such references other publications pretty heavily - so do check out the footnotes if you want to explore further. We'll post the next section on Funders' policies tomorrow.

Summary: Initiatives pursued by the funders and publishers of research to promote data-sharing have moved the agenda forward, however, cultural and technical barriers remain. Attitudes and abilities vary across specialities within biomedical research and though obliging data sharing has had some success, incentives and expertise are still lacking in many areas.



  The Current Situation

 The last ten years have seen consistent and targeted promotion of data sharing in research by organisations such as the Research Councils, the National Cancer Research Institute (NCRI), research charities and other funders and publishers of research. The aims are clear: “Ensuring data are made widely available to the research community accelerates the pace of discovery and enhances the efficiency of the research enterprise.”[1]

The assumption is that data sharing is a ‘good thing’ and that connectivity between data will enable greater research potential. There has been a lot of activity in areas such as access and governance, initiatives providing portals and developing standards and there is evidence that “in many research fields – from genetics and molecular biology to the social sciences –data sharing is ingrained in how researchers work”[2] and that, with regard to Systems Biology at least, “data sharing, despite some anomalies, is the prevailing ethic.”[3]

The picture is mixed across the life-sciences, however, as noted in this recent call for contributions to a thematic series on data standardisation, sharing and publication by the online Journal BM Research Notes: “different disciplines have embraced the possibilities of data sharing and open data to differing extents, and it can take the leadership of a small number of individuals to develop and promote their standard to secure widespread adoption, and enable interoperability of scientific data… In other cases a standard of data collection and preparation might be well known amongst circles of experts but perhaps unknown to researchers in different or even related fields. But with few journals considering data-driven articles and apparent inconsistencies in incentives and rewards for data publication, the availability of definitive and freely-available examples of re-usable, standardized data across the life sciences is patchy at best.”[4]

Funders and journals are addressing this issue, promoting data sharing by various means including policies obliging researchers to make their output publicly available. However, “Where funder policies do not reach, there is a mix of results. Some researchers make great efforts to share data while others may retain their findings or publish in a form that means that although data are available, they are not readily accessible”[5] or ‘protecting by pdf’ as the practice is known within the community.

The situation is least advanced in Social and Public Health Sciences: “There are many datasets produced by individual researchers or small project teams that could have long term viability if they were offered to an appropriate data centre, but this tends not to be the natural course of things. The sharing of datasets from small scale research projects appears to be relatively uncommon at present.”[6] Other analysts concur: “By contrast, this culture has yet to be widely embraced by the public health research community.”[7]

Whilst the battle for cultural change appears to be far advanced in some areas and at least engaged in others, attitudes are not the only barrier: “Problems of reuse centre around… technical issues… – the variety of formats, the non-standardisation of formats, the need for proprietary software and so forth.”[8]

The picture is not uniform across all fields within biomedical research - in some areas data sensitivity and cultural barriers remain more challenging to address than technical and ethical issues. Others, genomics for example, appear comparatively mature, with both cultural and technical issues well in hand.


[1] Walport M, Brest P. Sharing research data to improve public health. The Lancet, Early Online Publication, 10 January 2011
[2] Ibid.
[3] To Share or not to Share: Publication and Quality Assurance of Research Data Outputs - Report commissioned by the Research Information Network (RIN) in association with the Joint Information Systems Committee and the National Environment Research Council (NERC) – published June 2008. This report covered six discrete research areas, two of which were Social and Public Health Sciences and Genomics and two interdisciplinary areas, one of which was Systems Biology.
[4] A call for BMC Research Notes contributions promoting best practice in data standardization, sharing and publication; http://www.biomedcentral.com/1756-0500/3/235/
[5] Ibid.
[6] Ibid.
[7] Walport M, Brest P. Sharing research data to improve public health. The Lancet, Early Online Publication, 10 January 2011
[8] To Share or not to Share: Publication and Quality Assurance of Research Data Outputs